Repeat Finder using Blast

All significant local alignments are reported following the full end-to-end self-alignment.

Select a Blast program: blastn (DNA query) blastp (protein query)

Enter your sequence in FASTA format:

Here is an example of a single sequence in FASTA format:

>HMGI_HUMAN 106 bases, 2032 checksum.
SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEV
PTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQE
SSEEEQ

or
>my_seq PCR exp 12
     1 NVYHDGACPE GDIFYPGYCP RKREIHQLLV AFNQSLVTPT

    51 QDEEKILSDI QRACLQIAED LKHLNPFTG

Note that in FASTA format (the one shown above) each sequence is preceded by a line begining with a ">" followed by a unique name of 10 characters or fewer (the rest of the line can contain any other information you wish). The sequences can be written in upper or lower case, in lines of different lengths. The sequence lines can include blanks and numbers, they will be ignored.

Page last modified on 7 Jul 1998